Recent Scientific Publications

As of November 18, 2024

Buschbaum, C., Shama, L. N. S., Amorim, F. L. L., Brand, S., Broquard, C. M. A., Camillini, N., Cornelius, A., Dolch, T., Dummermuth, A., Feldner, J., Guignard, M. S., Habedank, J., Hoffmann, J. J. L., Horn, S., Konyssova, G., Koop-Jakobsen, K., Lauerburg, R., Mehler, K., Odongo, V., Petri, M., Reents, S., Rick, J. J., Rubinetti, S., Salahi, M., Sander, L., Sidorenko, V., Spence-Jones, H. C., van Beusekom, J. E. E., Waser, A. M., Wegner, K. M., & Wiltshire, K. H. (2024). Climate change impacts on a sedimentary coast—A regional synthesis from genes to ecosystems. Marine Biodiversity, 54(4), 64. https://doi.org/10.1007/s12526-024-01453-5

Dames, N. R., Rocke, E., Pitcher, G., Rybicki, E., Pfaff, M., & Moloney, C. L. (2024). Ecological roles of nano-picoplankton in stratified waters of an embayment in the southern Benguela. FEMS Microbiology Letters, fnae094. https://doi.org/10.1093/femsle/fnae094

Haviland, K., Howarth, R., Giblin, A., & Marino, R. (2024). The potential role of sediment iron and sulfur speciation in seagrass meadow loss and recovery. Ocean-Land-Atmosphere Research, 3, 0069. https://doi.org/10.34133/olar.0069

Iuffrida, L., Spezzano, R., Trapella, G., Cinti, N., Parma, L., De Marco, A., Palladino, G., Bonaldo, A., Candela, M., & Franzellitti, S. (2024). Physiological plasticity and life history traits affect Chamelea gallina acclimatory responses during a marine heatwave. Environmental Research, 263(Part 3), 120287. https://doi.org/10.1016/j.envres.2024.120287

Kim, J., Buffenstein, R., Bronikowski, A. M., Pilar Vanegas, N.-D., Rosas, L., Agudelo-Garcia, P., Mora, A. L., Rojas, M., Englund, D. A., LeBrasseur, N. K., Nunes, A., Robbins, P. D., Kohut, M. L., Kothadiya, S., Bardhan, R., Camell, C. D., Sturmlechner, I., Goronzy, J. J., Yeh, C.-Y., Lamming, D. W., Huang, S., Leiser, S. F., Escorcia, W., Gill, M., S., Taylor, J. R., Helfand, S. L., Korm, S., Gribble, K. E., Pehar, M., Blaszkiewicz, M., Townsend, K. L., McGregor, E. R., Anderson, R. M., Stilgenbauer, L., Sadagurski, M., Taylor, A., McNeill, E., Stoeger, T., & Bai, H. (2024). The Fourth Annual Symposium of the Midwest Aging Consortium. The Journals of Gerontology: Series A, 79(11), glae236. https://doi.org/10.1093/gerona/glae236

Ni, Z., Neifert, C., Rosete, A., Albeely, A. M., Yang, Y., Pratelli, M., Brecht, M., & Clemens, A. M. (2024). Tactile mechanisms and afferents underlying the rat pup transport response. Current Biology. https://doi.org/10.1016/j.cub.2024.10.016

Seaver, G. A., & Kuzirian, A. M. (2024). Estuary Nitrate Sources and Trends in Buzzards Bay. Journal of Coastal Research, 40(6), 1055–1067. https://doi.org/10.2112/JCOASTRES-D-24-00012.1

Kwiatkowski, E. R., Rosenthal, J. J. C., & Emery, P. (2024). Crosstalk between the circatidal and circadian clocks mediates behavioral adaptation to tidal patterns. Current Biology. https://doi.org/10.1016/j.cub.2024.09.067

Oikawa, P. Y., Sihi, D., Forbrich, I., Fluet-Chouinard, E., Najarro, M., Thomas, O., Shahan, J., Arias-Ortiz, A., Russell, S., Knox, S. H., Mcnicol, G., Wolfe, J., Windham-Myers, L., Stuart-Haentjens, E., Bridgham, S. D., Needelman, B., Vargas, R., Schafer, K., Ward, E. J., Megonigal, P., & Holmquist, J. (2024). A New Coupled Biogeochemical Modeling Approach Provides Accurate Predictions of Methane and Carbon Dioxide Fluxes Across Diverse Tidal Wetlands. Journal of Geophysical Research: Biogeosciences, 129(10), e2023JG007943. https://doi.org/10.1029/2023JG007943

Attah, A. T., Negrón-Moreno, P. N., Amigo-Duran, M., Zhang, L., Kenngott, M., Brecht, M., & Clemens, A. M. (2024). Sensory cues, behavior and fur-based drying in the rat wetness response. Scientific Reports, 14, 24550. https://doi.org/10.1038/s41598-024-74900-9 

Gemmell, B. J., Colin, S. P., & Costello, J. H. (2024). Hydromechanical properties of metachronal swimming in polychaetes. Scientific Reports, 14, 24374. https://doi.org/10.1038/s41598-024-70999-y

Goda, M., Shribak, M., Ikeda, Z., Okada, N., Tani, T., Goshima, G., Oldenbourg, R., & Kimura, A. (2024). Live-cell imaging under centrifugation characterized the cellular force for nuclear centration in the Caenorhabditis elegans embryo. Proceedings of the National Academy of Sciences of the United States of America, 121(43), e2402759121. https://doi.org/10.1073/pnas.2402759121

Nagata, R., D’Ambra, I., Lauritano, C., von Montfort, G., Djeghri, N., Jordano, M., Colin, S., Costello, J., & Leoni, V. (2024). Physiology and functional biology of Rhizostomeae jellyfish. Elsevier. https://doi.org/10.1016/bs.amb.2024.07.007

Aguilar-Camacho, J. M., Harry, N. D., & Zakas, C. (2024). Comparative Hox genes expression within the dimorphic annelid Streblospio benedicti reveals patterning variation during development. EvoDevo, 15, 12. https://doi.org/10.1186/s13227-024-00231-5

Allard, C. A. H., Herbert, A. L., Krueger, S. P., Liang, Q., Walsh, B. L., Rhyne, A. L., Gourlay, A. N., Seminara, A., Baldwin, M. W., Kingsley, D. M., & Bellono, N. W. (2024). Evolution of novel sensory organs in fish with legs. Current Biology, 34(19), 4349-4356.e7. https://doi.org/10.1016/j.cub.2024.08.014 

Garcia Arredondo, M., Kew, W., Chu, R., Jones, M. E., Boiteau, R. M., Cardon, Z. G., & Keiluweit, M. (2024). Differential Exudation Creates Biogeochemically Distinct Microenvironments during Rhizosphere Evolution. Environmental Science & Technology. https://doi.org/10.1021/acs.est.4c04108

Jokura, K., Anttonen, T., Rodriguez-Santiago, M., & Arenas, O. M. (2024). Rapid physiological integration of fused ctenophores. Current Biology, 34(19), R889–R890. https://doi.org/10.1016/j.cub.2024.07.084

Machmuller, M. B., Lynch, L. M., Mosier, S. L., Shaver, G. R., Calderon, F., Gough, L., Haddix, M. L., McLaren, J. R., Paul, E. A., Weintraub, M. N., Cotrufo, M. F., & Wallenstein, M. D. (2024). Arctic soil carbon trajectories shaped by plant–microbe interactions. Nature Climate Change. https://doi.org/10.1038/s41558-024-02147-3

Chung, C. S., Kou, Y., Shemtov, S. J., Verheijen, B. M., Flores, I., Love, K., Del Dosso, A., Thorwald, M. A., Liu, Y., Hicks, D., Sun, Y., Toney, R. G., Carrillo, L., Nguyen, M. M., Biao, H., Jin, Y., Jauregui, A. M., Quiroz, J. D., Head, E., Moore, D. L., Simpson, S., Thomas, K. W., Coba, M. P., Li, Z., Benayoun, B. A., Rosenthal, J. J. C., Kennedy, S. R., Quadrato, G., Gout, J.-F., & Vermulst, M. (2024). Transcript errors generate amyloid-like proteins in huwman cells. Nature Communications, 15, 8676. https://doi.org/10.1038/s41467-024-52886-2

Zakon, H. H. (2024). Evolution: Sea robins get a leg up. Current Biology, 34(19), R898–R901. https://doi.org/10.1016/j.cub.2024.08.045

Zhang, Y., McCarthy, L., Ruff, S. E., & Elhaik, E. (2024). Microbiome Geographic Population Structure (mGPS) Detects Fine-Scale Geography. Genome Biology and Evolution, evae209. https://doi.org/10.1093/gbe/evae209

Agrawal, A., Pathak, A., Ngwa, D. N., Thirumalai, A., Armstrong, P. B., & Singh, S. K. (2024). An evolutionarily conserved function of C-reactive protein is to prevent the formation of amyloid fibrils. Frontiers in Immunology, 15. https://doi.org/10.3389/fimmu.2024.1466865

Herbert, A. L., Allard, C. A. H., McCoy, M. J., Wucherpfennig, J. I., Krueger, S. P., Chen, H. I., Gourlay, A. N., Jackson, K. D., Abbo, L. A., Bennett, S. H., Sears, J. D., Rhyne, A. L., Bellono, N. W., & Kingsley, D. M. (2024). Ancient developmental genes underlie evolutionary novelties in walking fish. Current Biology. https://doi.org/10.1016/j.cub.2024.08.042

Ruff, S. E., Schwab, L., Vidal, E., Hemingway, J., Kraft, B., & Murali, R. (2024). Widespread occurrence of dissolved oxygen anomalies, aerobic microbes, and oxygen-producing metabolic pathways in apparently anoxic environments. FEMS Microbiology Ecology, fiae132. https://doi.org/10.1093/femsec/fiae132

Child, T., Costello, J. H., Gemmell, B. J., Sutherland, K. R., & Colin, S. P. (2024). High prey capture efficiencies of oceanic epipelagic lobate and cestid ctenophores. Journal of Plankton Research, fbae044. https://doi.org/10.1093/plankt/fbae044

Eren, A. M., & Banfield, J. F. (2024). Modern microbiology: Embracing complexity through integration across scales. Cell, 187(19), 5151–5170. https://doi.org/10.1016/j.cell.2024.08.028

Attenborough, T., Rawlinson, K., Diaz Soria, C., Ambridge, K., Sankaranarayanan, G., Graham, J., Cotton, J., Doyle, S., Rinaldi, G., & Berriman, M. (2024). A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife, 13. https://doi.org/10.7554/elife.95628.3

Eren, A. M., & Delmont, T. O. (2024). From marine microbial genomes to improve biotechnology. Nature. https://doi.org/10.1038/d41586-024-02661-6

Jessop, A.-L., Pirih, P., Wang, L., Patel, N. H., Clode, P. L., Schröder-Turk, G. E., & Wilts, B. D. (2024). Elucidating nanostructural organization and photonic properties of butterfly wing scales using hyperspectral microscopy. Journal of The Royal Society Interface, 21(218), 20240185. https://doi.org/10.1098/rsif.2024.0185

Opher, M., Loeb, A., Zucker, C., Goodman, A., Konietzka, R., Worden, A. Z., Economo, E. P., Miller, J. A., Alves, J., Grone, J., Kornbleuth, M., Peek, J. E. G., & Foley, M. M. (2024). The Passage of the Solar System through the Edge of the Local Bubble. The Astrophysical Journal, 972(2). https://doi.org/10.3847/1538-4357/ad596e

Arias-Ortiz, A., Wolfe, J., Bridgham, S. D., Knox, S., McNicol, G., Needelman, B. A., Shahan, J., Stuart-Haëntjens, E. J., Windham-Myers, L., Oikawa, P. Y., Baldocchi, D. D., Caplan, J. S., Capooci, M., Czapla, K. M., Derby, R. K., Diefenderfer, H. L., Forbrich, I., Groseclose, G., Keller, J. K., Kelley, C., Keshta, A. E., Kleiner, H. S., Krauss, K. W., Lane, R. R., Mack, S., Moseman-Valtierra, S., Mozdzer, T. J., Mueller, P., Neubauer, S. C., Noyce, G., Schafer, K. V. R., Sanders-DeMott, R., Schutte, C. A., Vargas, R., Weston, N. B., Wilson, B., Megonigal, J. P., & Holmquist, J. R. (2024). Methane fluxes in tidal marshes of the conterminous United States. Global Change Biology, 30(9), e17462. https://doi.org/10.1111/gcb.17462

Beca-Carretero, P., Meister, M., Teichberg, M., Moreira-Saporiti, A., Schneekloth, F., & Reuter, H. (2024). Methodological Insights into Implementing cellular automata models for simulating seagrass dynamics: Responses to global change effects. MethodsX, 13, 102936. https://doi.org/10.1016/j.mex.2024.102936

Johnson, C., Guo, M., Schneider, M. C., Su, Y., Khuon, S., Reiser, N., Wu, Y., Riviere, P. L., & Shroff, H. (2024). Phase-diversity-based wavefront sensing for fluorescence microscopy. Optica, 11(6), 806–820. https://doi.org/10.1364/OPTICA.518559

Klementz, B. C., Brenneis, G., Hinne, I. A., Laumer, E. M., Neu, S. M., Hareid, G. M., Gainett, G., Setton, E. V. W., Simian, C., Vrech, D. E., Joyce, I., Barnett, A. A., Patel, N. H., Harvey, M. S., Peretti, A. V., Gulia-Nuss, M., & Sharma, P. P. (2024). A novel expression domain of extradenticle underlies the evolutionary developmental origin of the chelicerate patella. Molecular Biology and Evolution, msae188. https://doi.org/10.1093/molbev/msae188

Schiebel, R., Aardema, H. M., Calleja, M. Ll., Dragoneas, A., Heins, L., de Angelis, I. H., Poehlker, C., Slagter, H., Vonhof, H., Walter, D., Arns, A. I., Adolphs, N., Auderset, A., Basic, S., Bieler, A., Bruewer, J. D., Chaabane, S., Cheng, Y., Chilinski, M. T., Cybulski, J. D., Disper, T., Duprey, N., Eichele, G., Fiedler, B., Fischer, A., Foreman, A. D., Fuchs, B. M., Galer, S., Harri, J., Jochum, K. P., Jost, A., Jung, J., Kleta, H., Lammel, G., Larink, O., Leibold, P., Martinez-Garcia, A., Moretti, S., Muller, J.-G., Nillius, B., Pan, X., Raj, S. S., Repschlager, J., Rodrigues, E., Ruff, S. E., Schmitt, M., Schmitter, J. L., Lara, A. S., Silva, P., Smart, S. M., Sorgel, M., Stoll, B., Su, H., Vogt, M., Wald, T., Weber, B., Weber, J., Weis, U., Amann, R., Aristegui, J., Dittmar, T., Gonzalez, M., O’Dea, A., Poschl, U. & Haug, G. H. (2024). Preface: Special Issue on Probing the Open Ocean With the Research Sailing Yacht Eugen Seibold for Climate Geochemistry. Journal of Geophysical Research: Atmospheres, 129(17), e2023JD040581. https://doi.org/10.1029/2023JD040581

Veseli, I., DeMers, M. A., Cooper, Z. S., Schechter, M. S., Miller, S., Weber, L., Smith, C. B., Rodriguez, L. T., Schroer, W. F., McIlvin, M. R., Lopez, P. Z., Saito, M., Dyhrman, S., Eren, A. M., Moran, M. A., & Braakman, R. (2024). Digital Microbe: A genome-informed data integration framework for team science on emerging model organisms. Scientific Data, 11, 967. https://doi.org/10.1038/s41597-024-03778-z

Chimileski, S., Borisy, G. G., Dewhirst, F. E., & Mark Welch, J. L. (2024). Tip extension and simultaneous multiple fission in a filamentous bacterium. Proceedings of the National Academy of Sciences, 121(37), e2408654121. https://doi.org/10.1073/pnas.2408654121

Matlin, K. S., & Green, S. (2024). Constraint-based reasoning in cell biology: On the explanatory role of context. History and Philosophy of the Life Sciences, 46(3), 30. https://doi.org/10.1007/s40656-024-00628-4

Attenborough, T., Rawlinson, K. A., Diaz Soria, C. L., Ambridge, K., Sankaranarayanan, G., Graham, J., Cotton, J. A., Doyle, S. R., Rinaldi, G., & Berriman, M. (2024). A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife, 13, RP95628. https://doi.org/10.7554/eLife.95628

Clarke, D. N., Kane, A., Perillo, M., Lowe, C. J., & Swartz, S. Z. (2024). VitelloTag: A tool for high-throughput cargo delivery into oocytes. Development, dev.202857. https://doi.org/10.1242/dev.202857

Iida, S., Ide, S., Tamura, S., Sasai, M., Tani, T., Goto, T., Shribak, M., & Maeshima, K. (2024). Orientation-independent-DIC imaging reveals that a transient rise in depletion attraction contributes to mitotic chromosome condensation. Proceedings of the National Academy of Sciences, 121(36), e2403153121. https://doi.org/10.1073/pnas.2403153121

Kwon, H., Hawkins, T., Zaimes, G., Infante, J., Kite-Powell, H., Stekoll, M., Roberson, L., Zotter, B., Augyte, S., Rocheleau, G., & Sims, N. (2024). Life-cycle analysis of offshore macroalgae production systems in the United States. Algal Research, 82, 103654. https://doi.org/10.1016/j.algal.2024.103654

Harry, C. J., Hibshman, J. D., Damatac, A., Davidson, P. L., Estermann, M. A., Flores-Flores, M., Holmes, C. M., Lázaro, J., Legere, E.-A., Leyhr, J., Thendral, S. B., Vincent, B. A., & Goldstein, B. (2024). Protocol for fluorescent live-cell staining of tardigrades. STAR Protocols, 5(3), 103232. https://doi.org/10.1016/j.xpro.2024.103232 *Authors from Embryology Course*

Holmes, G., Ferguson, S. R., Lewis, P. A., & Echeverri, K. (2024). LRRK2 kinase activity is necessary for development and regeneration in Nematostella vectensis. Neural Development, 19. https://doi.org/10.1186/s13064-024-00193-3

Rees, J. M., Kirk, K., Gattoni, G., Hockman, D., Sleight, V. A., Ritter, D. J., Benito-Gutierrez, È., Knapik, E. W., Crump, J. G., Fabian, P., & Gillis, J. A. (2024). A pre-vertebrate endodermal origin of calcitonin-producing neuroendocrine cells. Development, 151(20), dev202821. https://doi.org/10.1242/dev.202821

Bristol, E. M., Behnke, M. I., Spencer, R. G. M., McKenna, A., Jones, B. M., Bull, D. L., & McClelland, J. W. (2024). Eroding Permafrost Coastlines Release Biodegradable Dissolved Organic Carbon to the Arctic Ocean. Journal of Geophysical Research - Biogeosciences, 129(7), e2024JG008233. https://doi.org/10.1029/2024JG008233

Jiang, X., Gallager, S., Pàmies, R. P., Ruff, S. E., & Liu, Z. (2024). Laboratory-Simulated Photoirradiation Reveals Strong Resistance of Primary Macroplastics to Weathering. Environmental Science & Technology. https://doi.org/10.1021/acs.est.3c09891

McCoy, D. E., Haig, D., & Kotler, J. (2024). Egg donation and gestational surrogacy: Pregnancy is riskier with an unrelated embryo. Early Human Development, 196, 106072. https://doi.org/10.1016/j.earlhumdev.2024.106072

Min, E., Boelman, N., Gough, L., McLaren, J., Rastetter, E., Rowe, R., Rocha, A., Turnbull, M., & Griffin, K. (2024). The give and take of Arctic greening: Differential responses of the carbon sink-to-source threshold to light and temperature in tussock tundra may be influenced by vegetation cover. Communications Biology, 7, 950. https://doi.org/10.1038/s42003-024-06600-z

Shribak, M., & Iourieva, E. (2024). Two Complementary Label-Free Techniques: Orientation-Independent Differential Contrast and Polychromatic Polarization Microscopy. Microscopy and Microanalysis, 30(Supplement_1), ozae044.396. https://doi.org/10.1093/mam/ozae044.396

Erickson, J. R., Walker, S. E., Arenas Gomez, C. M., & Echeverri, K. (2024). Sall4 regulates downstream patterning genes during limb regeneration. Developmental Biology, 515, 151–159. https://doi.org/10.1016/j.ydbio.2024.07.015

Peña-Montenegro, T., Kleindienst, S., Allen, A., Eren, A., McCrow, J., Arnold, J., & Joye, S. (2024). Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant. Applied Environmental Microbiology, e0108324. https://doi.org/10.1128/aem.01083-24

Comstock, J., Henderson, L. C., Close, H. G., Liu, S., Vergin, K., Worden, A. Z., Wittmers, F., Halewood, E., Giovannoni, S., & Carlson, C. A. (2024). Marine particle size-fractionation indicates organic matter is processed by differing microbial communities on depth-specific particles. ISME Communications, ycae090. https://doi.org/10.1093/ismeco/ycae090

Lippmann, K. (2024). A Reduction in the Readily Releasable Vesicle Pool Impairs GABAergic Inhibition in the Hippocampus after Blood–Brain Barrier Dysfunction. International Journal of Molecular Sciences, 25(13). https://doi.org/10.3390/ijms25136862

Nowell, R. W., Rodriguez, F., Hecox-Lea, B. J., Mark Welch, D. B., Arkhipova, I. R., Barraclough, T. G., & Wilson, C. G. (2024). Bdelloid rotifers deploy horizontally acquired biosynthetic genes against a fungal pathogen. Nature Communications, 15, 5787. https://doi.org/10.1038/s41467-024-49919-1