Recent Scientific Publications

As of September 2, 2024

Attenborough, T., Rawlinson, K. A., Diaz Soria, C. L., Ambridge, K., Sankaranarayanan, G., Graham, J., Cotton, J. A., Doyle, S. R., Rinaldi, G., & Berriman, M. (2024). A single-cell atlas of the miracidium larva of Schistosoma mansoni reveals cell types, developmental pathways, and tissue architecture. eLife13, RP95628. https://doi.org/10.7554/eLife.95628

Clarke, D. N., Kane, A.Perillo, M., Lowe, C. J., & Swartz, S. Z. (2024). VitelloTag: A tool for high-throughput cargo delivery into oocytes. Development, dev.202857. https://doi.org/10.1242/dev.202857

Iida, S., Ide, S., Tamura, S., Sasai, M., Tani, T., Goto, T., Shribak, M., & Maeshima, K. (2024). Orientation-independent-DIC imaging reveals that a transient rise in depletion attraction contributes to mitotic chromosome condensation. Proceedings of the National Academy of Sciences121(36), e2403153121. https://doi.org/10.1073/pnas.2403153121

Kwon, H., Hawkins, T., Zaimes, G., Infante, J., Kite-Powell, H., Stekoll, M., Roberson, L., Zotter, B., Augyte, S., Rocheleau, G., & Sims, N. (2024). Life-cycle analysis of offshore macroalgae production systems in the United States. Algal Research, 82, 103654. https://doi.org/10.1016/j.algal.2024.103654

Harry, C. J., Hibshman, J. D.Damatac, A.Davidson, P. L.Estermann, M. A.Flores-Flores, M.Holmes, C. M.Lázaro, J.Legere, E.-A.Leyhr, J.Thendral, S. B.Vincent, B. A., & Goldstein, B. (2024). Protocol for fluorescent live-cell staining of tardigrades. STAR Protocols5(3), 103232. https://doi.org/10.1016/j.xpro.2024.103232 *Authors from Embryology Course*

Holmes, G., Ferguson, S. R., Lewis, P. A., & Echeverri, K. (2024). LRRK2 kinase activity is necessary for development and regeneration in Nematostella vectensisNeural Development, 19. https://doi.org/10.1186/s13064-024-00193-3

Rees, J. M., Kirk, K., Gattoni, G., Hockman, D., Sleight, V. A., Ritter, D. J., Benito-Gutierrez, È., Knapik, E. W., Crump, J. G., Fabian, P., & Gillis, J. A. (2024). A pre-vertebrate endodermal origin of calcitonin-producing neuroendocrine cells. Development151(20), dev202821. https://doi.org/10.1242/dev.202821

Bristol, E. M., Behnke, M. I., Spencer, R. G. M., McKenna, A., Jones, B. M., Bull, D. L., & McClelland, J. W. (2024). Eroding Permafrost Coastlines Release Biodegradable Dissolved Organic Carbon to the Arctic Ocean. Journal of Geophysical Research - Biogeosciences, 129(7), e2024JG008233. https://doi.org/10.1029/2024JG008233

Jiang, X., Gallager, S., Pàmies, R. P.Ruff, S. E., & Liu, Z. (2024). Laboratory-Simulated Photoirradiation Reveals Strong Resistance of Primary Macroplastics to Weathering. Environmental Science & Technology. https://doi.org/10.1021/acs.est.3c09891

McCoy, D. E., Haig, D., & Kotler, J. (2024). Egg donation and gestational surrogacy: Pregnancy is riskier with an unrelated embryo. Early Human Development196, 106072. https://doi.org/10.1016/j.earlhumdev.2024.106072

Min, E., Boelman, N., Gough, L., McLaren, J., Rastetter, E., Rowe, R., Rocha, A., Turnbull, M., & Griffin, K. (2024). The give and take of Arctic greening: Differential responses of the carbon sink-to-source threshold to light and temperature in tussock tundra may be influenced by vegetation cover. Communications Biology7, 950. https://doi.org/10.1038/s42003-024-06600-z

Shribak, M., & Iourieva, E. (2024). Two Complementary Label-Free Techniques: Orientation-Independent Differential Contrast and Polychromatic Polarization Microscopy. Microscopy and Microanalysis30(Supplement_1), ozae044.396. https://doi.org/10.1093/mam/ozae044.396

Erickson, J. R., Walker, S. E., Arenas Gomez, C. M., & Echeverri, K. (2024). Sall4 regulates downstream patterning genes during limb regeneration. Developmental Biology515, 151–159. https://doi.org/10.1016/j.ydbio.2024.07.015

Peña-Montenegro, T., Kleindienst, S., Allen, A., Eren, A., McCrow, J., Arnold, J., & Joye, S. (2024). Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant. Applied Environmental Microbiology, e0108324. https://doi.org/10.1128/aem.01083-24

Comstock, J., Henderson, L. C., Close, H. G., Liu, S., Vergin, K., Worden, A. Z.Wittmers, F., Halewood, E., Giovannoni, S., & Carlson, C. A. (2024). Marine particle size-fractionation indicates organic matter is processed by differing microbial communities on depth-specific particles. ISME Communications, ycae090. https://doi.org/10.1093/ismeco/ycae090

Lippmann, K. (2024). A Reduction in the Readily Releasable Vesicle Pool Impairs GABAergic Inhibition in the Hippocampus after Blood–Brain Barrier Dysfunction. International Journal of Molecular Sciences25(13). https://doi.org/10.3390/ijms25136862

Nowell, R. W., Rodriguez, F.Hecox-Lea, B. J.Mark Welch, D. B.Arkhipova, I. R., Barraclough, T. G., & Wilson, C. G. (2024). Bdelloid rotifers deploy horizontally acquired biosynthetic genes against a fungal pathogen. Nature Communications15, 5787. https://doi.org/10.1038/s41467-024-49919-1

Schaible, G. A., Jay, Z. J., Cliff, J., Schulz, F., Gauvin, C., Goudeau, D., Malmstrom, R. R., Ruff, S. E., Edgcomb, V., & Hatzenpichler, R. (2024). Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells. PLOS Biology22(7), e3002638. https://doi.org/10.1371/journal.pbio.3002638

Vargas-Muñiz, J. M. (2024). Adaptive fungal invasion of bat cells. Science385(6705), 142–143. https://doi.org/10.1126/science.adq5157

Berry, N. E., Cassford, M. S., Agostino, C. J., Dionne, E. N., Schmitt, O. J., Butela, K. A., Jacobs-Sera, D., DeGiorgis, J. A., & Cornely, K. (2024). Genomic sequences of Mycobacterium smegmatis A cluster phages LBerry, Pembroke, and Zolita. Microbiology Resource Announcements, e00504-24. https://doi.org/10.1128/mra.00504-24

Stekoll, M., Pryor, A., Meyer, A., Kite-Powell, H. L., Bailey, D., Barbery, K., Goudey, C. A., Lindell, S., Roberson, L., & Yarish, C. (2024). Optimizing seaweed biomass production—A two kelp solution. Journal of Applied Phycology. https://doi.org/10.1007/s10811-024-03296-w

Treidel, L. A., Deem, K. D., Salcedo, M. K., Dickinson, M. H., Bruce, H. S., Darveau, C.-A., Dickerson, B. H., Ellers, O., Glass, J. R., Gordon, C. M., Harrison, J. F., Hedrick, T. L., Johnson, M. G., Lebenzon, J. E., Marden, J. H., Niitepõld, K., Sane, S. P., Sponberg, S., Talal, S., Williams, C. M. & Wold, E. S. (2024). Insect Flight: State of the Field and Future Directions. Integrative and Comparative Biology, icae106. https://doi.org/10.1093/icb/icae106

Trouche, B., Schrieke, H., Duron, O., Eren, A. M., & Reveillaud, J. (2024). Wolbachia populations across organs of individual Culex pipiens: Highly conserved intra-individual core pangenome with inter-individual polymorphisms. ISME Communications4(1), ycae078. https://doi.org/10.1093/ismeco/ycae078

Brock, M. T., Morrison, H. G., Maignien, L., & Weinig, C. (2024). Impacts of sample handling and storage conditions on archiving physiologically active soil microbial communities. FEMS Microbiology Letters, fnae044. https://doi.org/10.1093/femsle/fnae044

Hanlon, R. T. (2024). Octopus cyanea, day octopus. In R. Rosa, I. G. Gleadall, G. J. Pierce, & R. Villanueva (Eds.), Octopus Biology and Ecology (pp. 61–74). Academic Press. https://doi.org/10.1016/B978-0-12-820639-3.00008-X

Casiano Rivera, C. V., Wallace, J. N.Fisher, G. E., & Morgan, J. R. (2024). Acute introduction of phosphoserine-129 α-synuclein induces severe swelling of mitochondria at lamprey synapses. microPublication Biology. https://doi.org/10.17912/micropub.biology.001206

Frangieh, C. J., Wilkinson, M. E., Strebinger, D., Strecker, J., Walsh, M. L., Faure, G., Yushenova, I. A., Macrae, R. K., Arkhipova, I. R., & Zhang, F. (2024). Internal initiation of reverse transcription in a Penelope-like retrotransposon. Mobile DNA15, 12. https://doi.org/10.1186/s13100-024-00322-z

Pelagalli, C., Sera, D.-J., DeGiorgis, J. A., & Cornely, K. (2024). Mycobacteriophage maravista: A cluster F1 phage discovered on Cape Cod, Massachusetts. Microbiology Resource Announcements, e00502-24. https://doi.org/10.1128/mra.00502-24

Rosa, R., Santos, C. P., Borges, F., Amodio, P., Amor, M., Bower, J. R., Caldwell, R. L., Di Cosmo, A., Court, M., Fiorito, G., Gestal, C., González, Á. F., Guerra, Á., Hanlon, R. T., Hofmeister, J. K. K., Ibáñez, C. M., Ikeda, Y., Imperadore, P., Kommritz, J. G., Kuba, M., Hall, K. C., Lajbner, Z., Leite, T. S., Lopes, V. M., Markaida, U., Moltschaniwskyj, N. A., Nabhitabhata, J., Ortiz, N., Otjacques, E., Pizzulli, F., Ponte, G., Polese, G., Raffini, F., Rosas, C., Roura, A., Sampaio, E., Segawa, S., Simakov, O., Sobrino, I., Storero, L. P., Voight, J. R., Williams, B. L., Zheng, X., Pierce, G. J., Villanueva, R., & Gleadall, I. G. (2024). Chapter 23—Past, present, and future trends in octopus research. In R. Rosa, I. G. Gleadall, G. J. Pierce, & R. Villanueva (Eds.), Octopus Biology and Ecology (pp. 421–454). Academic Press. https://doi.org/10.1016/B978-0-12-820639-3.00010-8

Zhou, Y., O’Meara, T., Cardon, Z. G., Wang, J., Sulman, B. N., Giblin, A. E., & Forbrich, I. (2024). Simulated plant-mediated oxygen input has strong impacts on fine-scale porewater biogeochemistry and weak impacts on integrated methane fluxes in coastal wetlands. Biogeochemistry. https://doi.org/10.1007/s10533-024-01145-z

Eckmann, C. A., Bachy, C., Wittmers, F., Strauss, J., Blanco-Bercial, L., Vergin, K. L., Parsons, R. J., Kudela, R. M., Johnson, R., Bolaños, L. M., Giovannoni, S. J., Carlson, C. A., & Worden, A. Z. (2024). Recurring seasonality exposes dominant species and niche partitioning strategies of open ocean picoeukaryotic algae. Communications Earth & Environment5, 266. https://doi.org/10.1038/s43247-024-01395-7

Haviland, K., Howarth, R.Hayn, M., & Giblin, A. (2024). Characterizing Spatial and Temporal Trends in Net Sediment Accumulation in Seagrass Meadows. Estuaries and Coasts. https://doi.org/10.1007/s12237-024-01365-4

Metzger, B., & Özpolat, B. D. (2024). Developmental stage dependent effects of posterior and germline regeneration on sexual maturation in Platynereis dumeriliiDevelopmental Biology. https://doi.org/10.1016/j.ydbio.2024.05.013

Perillo, M., Alessandro, T., Toscano, A., & Annunziata, R. (2024). Larval development of Holothuria tubulosa, a new tractable system for evo-devo. Frontiers in Ecology and Evolution12. https://doi.org/10.3389/fevo.2024.1409174

Whittaker, B., Zeigler, E., Garcia-Mata, R., Wallace, J. N.Morgan, J. R., Rodal, A. A., & Welch, M. D. (2024). From pipette to palette: Bridging science and art at MBoCMolecular Biology of the Cell35(6), ed2. https://doi.org/10.1091/mbc.E24-04-0149

De Niz, M., Escobedo García, R., Terán Ramirez, C., Pakowski, Y., Abonza, Y., Bialy, N., Orr, V. L., Olivera, A., Abonza, V., Alleva, K., Allodi, S., Almeida, M. F., Becerril Cuevas, A. R., Bonnet, F., Burgos Solorio, A., Chew, T.-L., Chiabrando, G., Cimini, B., Cleret-Buhot, A., Jimenez, G. C., Daza, L., De Sa, V., De Val, N., Delgado-Alvarez, D. L., Eliceiri, K., Fiolka, R., Grecco, H., Hanein, D., Herrera, P. H., Hockberger, P., Hernandez, H. O., Guadarrama, Y. H., Itano, M., Jacobs, C. A., Jimenez-Garcia, L. F., Jimenez Sabinina, V., Kamaid, A., Keppler, A., Kumar, A., Lacoste, J., Lovy, A., Luby-Phelps, K., Mahadevan-Jansen, A., Malacrida, L., Mehta, S. B., Miller, C., Miranda, K., Moore, J. A., North, A., O’Toole, P., Olivares Ubano, M., Pietrasanta, L. I., Portugal, R. V., Rossi, A. H., Sanchez Contreras, J., Strambio-De-Castilla, C., Soldevila, G., Vale, B., Vazquez, D., Wood, C., Brown, C. M., & Guerrero, A. (2024). Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy294(3), 420–439. https://doi.org/10.1111/jmi.13318

Liguori, A.Korm, S.Profetto, A.Richters, E., & Gribble, K. E. (2024). Maternal age effects on offspring lifespan and reproduction vary within a species. Ecology and Evolution14(5), e11287. https://doi.org/10.1002/ece3.11287

Sutherland, K. R., Damian-Serrano, A., Du Clos, K. T., Gemmell, B. J., Colin, S. P., & Costello, J. H. (2024). Spinning and corkscrewing of oceanic macroplankton revealed through in situ imaging. Science Advances10(20), eadm9511. https://doi.org/10.1126/sciadv.adm9511

Wilson, S., Moody, A., McKenzie, T., Cardenas, M., Luijendijk, E., Sawyer, A., Wilson, A., Michael, H., Xu, B., Knee, K., Cho, H., Weinstein, Y., Paytan, A., Moosdorf, N., Chen, C., Beck, M., Lopez, C., Murgulet, D., Kim, G., Charette, M. A., Waska, H., Ibanhez, J. S. P., Chaillou, G., Oehler, T., Onodera, S., Saito, M., Rodellas, V., Dimova, N., Montiel, D., Dulai, H., Richardson, C., Du, J., Petermann, E., Chen, X., Davis, K. L., Lamontagne, S., Sugimoto, R., Wang, G., Li, H., Torres, A. I., Demir, C., Bristol, E., Connolly, C. T., McClelland, J. W., Silva, B. J., Tait, D., Kumar, BSK, Viswanadham, R., Sarma, VVSS, Silva-Filho, E., Shiller, A., Lecher, A., Tamborski, J., Bokuniewicz, H., Rocha, C., Reckhart, A., Bottcher, M. E., Jiang, S., Stieglitz, T., Gbewezoun, H. G. V., Charbonnier, C., Anschutz, P., Hernandez-Terrones, L. M., Babu, S., Szymczycha, B., Sadat-Noori, M., Niencheski, F., Null, K., Tobias, C., Song, B., Anderson, I. C., & Santos, I. (2024). Global subterranean estuaries modify groundwater nutrient loading to the ocean. Limnology and Oceanography Letters. https://doi.org/10.1002/lol2.10390

Bullock, E. J., Schaal, I. V., Cardenas, M. B., McClelland, J. W., Henderson, P. B., & Charette, M. A. (2024). Seasonality of submarine groundwater discharge to an Arctic coastal lagoon. Limnology and Oceanography. https://doi.org/10.1002/lno.12585

Sulman, B. N., Wang, J., LaFond-Hudson, S., O’Meara, T. A., Yuan, F., Molins, S., Hammond, G., Forbrich, I., Cardon, Z. G., & Giblin, A. (2024). Integrating Tide-Driven Wetland Soil Redox and Biogeochemical Interactions Into a Land Surface Model. Journal of Advances in Modeling Earth Systems16(4), e2023MS004002. https://doi.org/10.1029/2023MS004002

Arkhipova, I., & Yushenova, I. (2023). To be mobile or not: The variety of reverse transcriptases and their recruitment by host genomes. Биохимия88(11), 2127–2137. https://doi.org/10.31857/s0320972523110088

Maes, S. L., Dietrich, J., Midolo, G., Schwieger, S., Kummu, M., Vandvik, V., Aerts, R., Althuizen, I. H. J., Biasi, C., Björk, R. G., Böhner, H., Carbognani, M., Chiari, G., Christiansen, C. T., Clemmensen, K. E., Cooper, E. J., Cornelissen, J. H. C., Elberling, B., Faubert, P., Fetcher, N., Forte, T. G. W., Gaudard, J., Gavazov, K., Guan, Z., Guomundsson, J., Gya, R., Hallin, S., Hansen, B. B., Haugum, S. V., He, J.-S., Hicks Pries, C., Hovenden, M. J., Jalava, M., Jonsdottir, I. S., Juhanson, J., Jung, J. Y., Kaarlejarvi, E., Kwon, M. J., Lamprecht, R. E., Le Moullec, M., Lee, H., Marushchak, M. E., Michelsen, A., Munir, T. M., Myrsky, E. M., Nielsen, C. S., Nyberg, M., Olofsson, J., Oskarsson, H., Parker, T. C., Pedersen, E. P., Petit Bon, M., Petraglia, A., Raundrup, K., Ravn, N. M. R., Rinnan, R., Rodenhizer, H., Ryde, I., Schmidt, N. M., Schuur, E. A. G., Sjogersten, S., Stark, S., Strack, M., Tang, J., Tolvanen, A., Topper, J. P., Vaisanen, M. K., van Logtestijn, R. S. P., Voigt, C., Walz, J., Weedon, J. T., Yang, Y., Ylanne, H., Bjorkman, M. P., Sarneel, J. M., & Dorrepaal, E. (2024). Environmental drivers of increased ecosystem respiration in a warming tundra. Nature. https://doi.org/10.1038/s41586-024-07274-7

Álvarez-Campos, P., García-Castro, H., Emili, E., Pérez-Posada, A., del Olmo, I., Peron, S., Salamanca-Díaz, D. A., Mason, V., Metzger, B., Bely, A. E., Kenny, N. J., Özpolat, B. D., & Solana, J. (2024). Annelid adult cell type diversity and their pluripotent cellular origins. Nature Communications15, 3194. https://doi.org/10.1038/s41467-024-47401-6

Mantica, F., Iñiguez, L. P., Marquez, Y., Permanyer, J., Torres-Mendez, A., Cruz, J., Franch-Marro, X., Tulenko, F., Burguera, D., Bertrand, S., Doyle, T., Nouzova, M., Currie, P. D., Noriega, F. G., Escriva, H., Arnone, M. I., Albertin, C. B., Wotton, K. R., Almudi, I., Martin, D., & Irimia, M. (2024). Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature Ecology & Evolution. https://doi.org/10.1038/s41559-024-02398-5

O’Shea, R., Capuzzo, E., Hemming, V., Grebe, G., Stafford, R., van den Burg, S. W. K., Wood, D., Watson, G., Wells, V., Johnson, T., Erbs, S., W. van Hal, J., Binnerts, B., Collins, A. M., & Howe, C. (2024). Managing offshore multi-use settings: Use of conceptual mapping to reduce uncertainty of co-locating seaweed aquaculture and wind farms. Journal of Environmental Management358, 120696. https://doi.org/10.1016/j.jenvman.2024.120696

Petrova, K., Tretiakov, M., Kotov, A., Monsoro-Burq, A. H., & Peshkin, L. (2024). A new atlas to study embryonic cell types in Xenopus. Developmental Biology. https://doi.org/10.1016/j.ydbio.2024.04.003

Liu, X. J. A., Han, S., Frey, S. D., Melillo, J. M., Zhou, J., & DeAngelis, K. M. (2024). Microbial responses to long-term warming differ across soil microenvironments. ISME Communications, ycae051. https://doi.org/10.1093/ismeco/ycae051

Harbeitner, R. C., Wittmers, F., Yung, C. C. M., Eckmann, C. A., Hehenberger, E., Blum, M., Needham, D. M., & Worden, A. Z. (2024). Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions. PLOS ONE19(4), e0298139. https://doi.org/10.1371/journal.pone.0298139

Roberson, L.Grebe, G., Arzeno-Soltero, I., Bailey, D., Chan, S., Davis, K., Goudey, C., Kite-Powell, H., Lindell, S., Manganelli, D., Marty-Rivera, M., Ng, C., Rollano, F., Saenz, B., Van Cise, A., Waters, T., Yang, Z., & Yarish, C. (2024). Developing Cultivation Systems and Better Management Practices for Caribbean Tropical Seaweeds in US Waters. In Tropical Phyconomy Coalition Development (Vol. 11, pp. 121–141). Springer Nature. https://doi.org/10.1007/978-3-031-47806-2_11

Wang, T., Du, B., Forbrich, I., Zhou, J., Polen, J., Sunderland, E., Balcom, P., Chen, C., & Obrist, D. (2024). Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA. Biogeosciences21(6), 1461–1476. https://doi.org/10.5194/bg-21-1461-2024