Ecosystems Publications
Recent Publications
Elkassas S. M., Fortunato C. S., Grim S. L., Butterfield D. A., Holden J. F., Vallino J. J., Algar C. K., Zeigler Allen L., Larson B. T., Proskurowski G., Reddington E., Stewart L. C., Topçuoğlu B., Huber J. A. (2025). Metabolic and population profiles of active subseafloor autotrophs in young oceanic crust at deep-sea hydrothermal vents.. Appl Environ Microbiol. doi: 10.1128/aem.01868-25
Macdonald A. A., Dowling Q. S., Cardon Z. G. (2025). Beech leaf disease reduces nitrogen retranslocation at leaf fall, altering litter chemistry. Oecologia. 207. doi: 10.1007/s00442-025-05790-5
Wiegman A. R. H., Kennedy C. D., Neill C., Jakuba R. W., Welsh M. K., Millar D., Buda A. (2025). Modeling Attenuation of Nitrogen Loads Delivered to Coastal Bays From Ecological Restoration of Cultivated Wetlands. Journal Of Geophysical Research Biogeosciences. 130. doi: 10.1029/2025jg008742
Atwood A., Coe M. T., Neill C., Maracahipes-Santos L., Brando P., Riskin S. H., Castanho A., Deegan L., Silveiro A. C., Macedo M. N. (2025). Deep Soil Water Reservoirs Modulate Land Use and Drought Effects on the Water Budget of Amazon Headwaters. Water Resources Research. 61. doi: 10.1029/2024WR039729
Reed D. E., Chu H., Peter B. G., Chen J., Abraha M., Amiro B., Anderson R. G., Arain M. A., Arruda P., Barron-Gafford G. A., Bernacchi C., Beverly D. P., Biraud S. C., Black T. A., Blanken P. D., Bohrer G., Bowler R., Bowling D. R., Bret-Harte M. S., Bretfeld M., Brunsell N. A., Bullock S. H., Celis G., Chen X., Classen A. T., Cook D. R., Cueva A., Dalmagro H. J., Davis K., Desai A., Duff A. J., Dunn A. L., Durden D., Edgar C. W., Euskirchen E., Bracho R., Ewers B., Flanagan L. B., Florian C., Foord V., Forbrich I., Forsythe B. R., Frank J., Garatuza-Payan J., Goslee S., Gough C., Green M., Griffis T., Helbig M., Hill A. C., Hinkle R., Horne J., Humphreys E., Ikawa H., Iwahana G., Jassal R., Johnson B., Johnson M., Kannenberg S. A., Kelsey E., King J., Knowles J. F., Knox S., Kobayashi H., Kolb T., Kolka R., Krauss K. W., Kutzbach L., Lamb B., Law B., Lee S.-C., Lee X., Liu H., Loescher H. W., Malone S. L., Matamala R., Mauritz M., Metzger S., Meyer G., Mitra B., Munger J. W., Nesic Z., Noormets A., O'Halloran T. L., O'Keeffe P. T., Oberbauer S. F., Oechel W., Oikawa P., Olivas P. C., Ouimette A., Pastorello G., Perez-Quezada J. F., Phillips C., Posse G., Qu B., Quinton W. L., Reba M. L., Richardson A. D., Picasso V., Rocha A. V., Rodriguez J. C., Ruzol R., Saleska S., Scott R. L., Schreiner-McGraw A. P., Schuur E. A. G., Silveira M., Sonnentag O., Spittlehouse D. L., Staebler R., Starr G., Staudhammer C., Still C., Sturtevant C., Sullivan R. C., Suyker A., Trejo D., Ueyama M., Vargas R., Viner B., Vivoni E. R., Wang D., Ward E. J., Wiesner S., Windham-Myers L., Yannick D., Yepez E. A., Zenone T., Zhao J., Zona D. (2025). Network of networks: Time series clustering of AmeriFlux sites. Agricultural And Forest Meteorology. 372:110686. doi: 10.1016/j.agrformet.2025.110686
Thoman R. L., Moon T. A., Druckenmiller M. L., Askjaer T. G., Ballinger T. J., Bhatt U. S., Berner L. T., Bernhard G. H., Bigalke S., Bjerke J. W., Bliss A., Box J. E., Brady M., Brettschneider B., Butler A. H., Christiansen H. H., Crawford A., Decharme B., Derksen C., Divine D., Elias Chereque A., Epstein H. E., Farrell S., Fausto R. S., Fettweis X., Fioletov V. E., Forbes B. C., Frost G. V. J., Gerland S., Grooß J.-U., Hanna E., Hendricks S., Howell S., Ialongo I., Isaksen K., Jia G., Johnsen B., Kaleschke L., Kim S.-J., Labe Z. M., Lader R., Lakkala K., Lara M. J., Lee S. H., Loomis B. D., Luojus K., Macander M. J., Magnússon R. Í., Mankoff K. D., McClelland J. W., Medley B., Meier W. N., Montesano P. M., Mote T. L., Motrøen Gjelten H., Mudryk L., Müller R., Neigh C. S. R., Nyland K. E., Overland J. E., Perovich D. K., Petty A., Phoenix G. K., Poinar K., Ricker R., Romanovsky V. E., Scheller J. H., Serreze M. C., Shiklomanov A. I., Shiklomanov N. I., Smith B. E., Smith S. L., Spencer R. G. M., Streletskiy D. A., Suslova A., Svendby T., Tank S. E., Tian-Kunze X., Tedesco M., Timmermans M.-L., Tømmervik H., Tretiakov M., Waigl C. F., Walker D. S. A., Walsh J. E., Wang M., Webster M., Yang D., Zolkos S. (2025). The Arctic. Bulletin Of The American Meteorological Society. 106:s300-s356. doi: 10.1175/bams-d-25-0104.1
Ruyle B. J., Merder J., Spencer R. G. M., Mcclelland J. W., Tank S. E., Michalak A. M. (2025). Changes in the Composition of Nitrogen Yields in Large Arctic Rivers Linked to Temperature and Precipitation. Global Biogeochemical Cycles. 39. doi: 10.1029/2025GB008639
Ferretti P., Martignoni M. M., McManus L. C., Sakal T., Liaghat A., Stevens B., Dahlin K.J.-M., Souza L. S., Cardon Z. G., Silveira C. B., Bordenstein S. R., Roughgarden J. (2025). Theory of host-microbe symbioses: Challenges and opportunities. Cell Host & Microbe. 33:1052-1056. doi: 10.1016/j.chom.2025.05.001
Bolscher T., Cardon Z. G., Garcia Arredondo M., Grand S., Griffen G., Hestrin R., Imboden J., Jamoteau F., Lacroix E. M., Perez Castro S., Persson P., Riley W. J., Keiluweit M. (2025). Vulnerability of mineral-organic associations in the rhizosphere. Nature Communications. 16. doi: 10.1038/s41467-025-61273-4
Weiss M., Holland A. R., D'Amato A. W., Deegan L. A., Farmer W. H., Hoving C., Karmalkar A. V., Latzka A., Magee M., McIntyre P. B., Morelli T. L., Notaro M., Olmstead N., Palmer R. N., Pau N., Renfrew R., Ribic C. A., Sheppard J., Staudinger M. D., Zuckerberg B., Bradley B. A. (2025). Relationship-centered engagement bridges the divide between science and management, and enhances climate adaptation. Bioscience. doi: 10.1093/biosci/biaf087
Uveges B. T., Howarth R. W., Sparks J. P. (2025). Fossil fuel methane emissions likely underestimated in a model based on atmospheric δ<SUP>13</SUP>C trends. Proceedings Of The National Academy Of Sciences Of The United States Of America. 122. doi: 10.1073/pnas.2507837122
Woods P. H., Speth D. R., Laso-Perez R., Utter D. R., Ruff S. E., Orphan V. J. (2025). Identification of key steps in the evolution of anaerobic methanotrophy in <i>Candidatus</i> Methanovorans (ANME-3) archaea. Science Advances. 11. doi: 10.1126/sciadv.adq5232
Budy P., Pennock C. A., Messenger S., Pehrson H., Adler E., Thiede G. P., Christman N. R., Crump B. C., Giblin A. E., Kling G. W. (2025). Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure. Oecologia. 207. doi: 10.1007/s00442-025-05681-9
Hashim M. S., Conte M. H., Salter M. A., Pedrosa-Pamies R., Weber J. C., Hayden M. G., Wilson R. W., Perry C. T., Crowley S. F., Dennis P. F., Bish D., Subhas A. V. (2025). Fish Carbonates in the North Atlantic and Their Potential Role in the Carbon Cycle. Global Biogeochemical Cycles. 39. doi: 10.1029/2024GB008387
Joern G. M., Pedrosa-Pàmies R., Jiang X., Liu Z., Bochdansky A. B. (2025). Characterization of microbial biofilms on marine plastics: community development and density implications for vertical transport dynamics. Frontiers In Marine Science. 12:1581727. doi: 10.3389/fmars.2025.1581727
Hopkinson C. S., Weston N. B., Vallino J. J., Garritt R. H., Forbrich I. (2025). Comparative Metabolism and Blue Carbon Sequestration of Two Wetland-Dominated Estuaries. Ocean-Land-Atmosphere Research. 4. doi: 10.34133/olar.0091
Vallino J. J., Ahern O. M., Huber J. A. Deriving microbial food web structure by maximizing entropy production over variable timescales. doi: 10.1101/2025.04.30.651452
Vineis J. H., Bulseco A. N., Cardon Z. G., Bowen J. L. Microbial consortia in salt marsh sediments are sequentially buried over millennia and genomic complementarity analysis indicates an important role in complex carbon decomposition. doi: 10.1101/2025.07.18.665577
Luo E., Pham N. D., Rogers T. J., Vallino J. J., Benner B. E., Trubl G., Huber J. A. Virus-mediated recycling of chemoautotrophic biomass. doi: 10.1101/2025.05.27.656380
Elkassas S. M., Fortunato C. S., Grim S. L., Butterfield D. A., Holden J. F., Vallino J. J., Algar C. K., Allen L. Z., Larson B. T., Proskurowsk G., Reddington E., Stewart L. C., Topçuoğlu B., Huber J. A. Metabolic and Population Profiles of Active Subseafloor Autotrophs in Young Oceanic Crust at Deep-Sea Hydrothermal Vents. doi: 10.1101/2025.04.25.650746