Ecosystems Publications

Recent Publications

Reed D. E., Chu H., Peter B. G., Chen J., Abraha M., Amiro B., Anderson R. G., Arain M. A., Arruda P., Barron-Gafford G. A., Bernacchi C., Beverly D. P., Biraud S. C., Black T. A., Blanken P. D., Bohrer G., Bowler R., Bowling D. R., Bret-Harte M. S., Bretfeld M., Brunsell N. A., Bullock S. H., Celis G., Chen X., Classen A. T., Cook D. R., Cueva A., Dalmagro H. J., Davis K., Desai A., Duff A. J., Dunn A. L., Durden D., Edgar C. W., Euskirchen E., Bracho R., Ewers B., Flanagan L. B., Florian C., Foord V., Forbrich I., Forsythe B. R., Frank J., Garatuza-Payan J., Goslee S., Gough C., Green M., Griffis T., Helbig M., Hill A. C., Hinkle R., Horne J., Humphreys E., Ikawa H., Iwahana G., Jassal R., Johnson B., Johnson M., Kannenberg S. A., Kelsey E., King J., Knowles J. F., Knox S., Kobayashi H., Kolb T., Kolka R., Krauss K. W., Kutzbach L., Lamb B., Law B., Lee S.-C., Lee X., Liu H., Loescher H. W., Malone S. L., Matamala R., Mauritz M., Metzger S., Meyer G., Mitra B., Munger J. W., Nesic Z., Noormets A., O'Halloran T. L., O'Keeffe P. T., Oberbauer S. F., Oechel W., Oikawa P., Olivas P. C., Ouimette A., Pastorello G., Perez-Quezada J. F., Phillips C., Posse G., Qu B., Quinton W. L., Reba M. L., Richardson A. D., Picasso V., Rocha A. V., Rodriguez J. C., Ruzol R., Saleska S., Scott R. L., Schreiner-McGraw A. P., Schuur E. A. G., Silveira M., Sonnentag O., Spittlehouse D. L., Staebler R., Starr G., Staudhammer C., Still C., Sturtevant C., Sullivan R. C., Suyker A., Trejo D., Ueyama M., Vargas R., Viner B., Vivoni E. R., Wang D., Ward E. J., Wiesner S., Windham-Myers L., Yannick D., Yepez E. A., Zenone T., Zhao J., Zona D. (2025). Network of networks: Time series clustering of AmeriFlux sites. Agricultural And Forest Meteorology. 372:110686. doi: 10.1016/j.agrformet.2025.110686

Ferretti P., Martignoni M. M., McManus L. C., Sakal T., Liaghat A., Stevens B., Dahlin K.J.-M., Souza L. S., Cardon Z. G., Silveira C. B., Bordenstein S. R., Roughgarden J. (2025). Theory of host-microbe symbioses: Challenges and opportunities. Cell Host & Microbe. 33:1052-1056. doi: 10.1016/j.chom.2025.05.001

Weiss M., Holland A. R., D'Amato A. W., Deegan L. A., Farmer W. H., Hoving C., Karmalkar A. V., Latzka A., Magee M., McIntyre P. B., Morelli T. L., Notaro M., Olmstead N., Palmer R. N., Pau N., Renfrew R., Ribic C. A., Sheppard J., Staudinger M. D., Zuckerberg B., Bradley B. A. (2025). Relationship-centered engagement bridges the divide between science and management, and enhances climate adaptation. Bioscience. doi: 10.1093/biosci/biaf087

Conte M. H., Pedrosa-Pàmies R., Weber J. C., Johnson R. J. (2025). The climatology of the deep particle flux in the oligotrophic western North Atlantic gyre, 1978–2022. Progress In Oceanography. 234:103433. doi: 10.1016/j.pocean.2025.103433

Valiela I., Chenoweth K., Day J. (2025). Meta-analysis of vegetation responses to experimental nitrogen enrichments done in salt marshes under different sea level rise regimes reveal interaction of N supply and sea level rise. The Science Of The Total Environment. 975:179198. doi: 10.1016/j.scitotenv.2025.179198

Sullivan H. L., Holtzer J., Deegan L. A., Bowen J. L. (2025). The Effect of Runnels on Salt Marsh Sediment Dynamics, Vegetation, and Nitrogen Cycling. Estuaries And Coasts. 48:73. doi: 10.1007/s12237-025-01511-6

Joern G. M., Pedrosa-Pàmies R., Jiang X., Liu Z., Bochdansky A. B. (2025). Characterization of microbial biofilms on marine plastics: community development and density implications for vertical transport dynamics. Frontiers In Marine Science. 12:1581727. doi: 10.3389/fmars.2025.1581727

Malhotra A., Megonigal P., Forbrich I., Määttä T., Morris K., Bittencourt Peixoto R., Wilson S., Zheng J., Bailey V. (2025). Revisiting the primary production control on wetland methane emission. doi: 10.5194/egusphere-egu25-12843

Peck E. K., Walker J. E., Ackerman K. V., Carr J., Correll M. D., Defne Z., Deegan L. A., Eaton M. J., Ganju N. K., Hartley M., Johnson C., Mercer J., Ruskin K. J., Woodruff J. D., Yellen B. (2025). Distribution and disturbances of ditches across salt marshes of the Northeast U.S. with implications for management and restoration. Journal Of Environmental Management. 376:124444. doi: 10.1016/j.jenvman.2025.124444

Hopkinson C. S., Weston N. B., Vallino J. J., Garritt R. H., Forbrich I. (2025). Comparative Metabolism and Blue Carbon Sequestration of Two Wetland-Dominated Estuaries. Ocean-Land-Atmosphere Research. 4. doi: 10.34133/olar.0091

Simon S. A., Soares A. R., Bornemann T. L. V., Lange A., Griesdorn L., Fuentes A., Dieckmann M., Krok B. A., Ruff S. E., Hügler M., Moraru C., Probst A. J. (2025). Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing. Isme Communications. 5:ycaf041. doi: 10.1093/ismeco/ycaf041

Vallino J. J., Ahern O. M., Huber J. A. Deriving microbial food web structure by maximizing entropy production over variable timescales. doi: 10.1101/2025.04.30.651452

Vineis J. H., Bulseco A. N., Cardon Z. G., Bowen J. L. Microbial consortia in salt marsh sediments are sequentially buried over millennia and genomic complementarity analysis indicates an important role in complex carbon decomposition. doi: 10.1101/2025.07.18.665577

Luo E., Pham N. D., Rogers T. J., Vallino J. J., Benner B. E., Trubl G., Huber J. A. Virus-mediated recycling of chemoautotrophic biomass. doi: 10.1101/2025.05.27.656380

Elkassas S. M., Fortunato C. S., Grim S. L., Butterfield D. A., Holden J. F., Vallino J. J., Algar C. K., Allen L. Z., Larson B. T., Proskurowski G., Reddington E., Stewart L. C., Topçuoğlu B., Huber J. A. Metabolic and Population Profiles of Active Subseafloor Autotrophs in Young Oceanic Crust at Deep-Sea Hydrothermal Vents. doi: 10.1101/2025.04.25.650746